لیست و عناوین مقالات نمایه شده از یازدهمین همایش ملی و دومین همایش بین المللی بیوانفورماتیک ایران به صورت زیر می باشد:
1. A Novel Approach for Identifying Cancer Drivers in Coding andNon-coding Genomic Elements
2. Transcriptome-wide analysis of DNA-RNA hybrids reveals how non-coding RNAs contribute to ASDs
3. Reconstruction of genome-scale metabolic model for Helicobacter pylori
4. A bioinformatics approach to analysis UPR-related gens impact onAML
5. Finding a genomic pattern for classifying breast cancer patients byRandom Forest and Linear Discriminant Analysis and cancer-specificbiomarkers by Integrative analysis of DNA methylation and geneexpression
6. Candidate prognostic gene signatures in lung cancer risk amongasthmatic and COPD patients
7. Identification of Transcription factors involved in cisplatin drugresistance in ovarian cancer by integrated analysis of transcriptomeand epigenomic data
8. Purple Sulfur Oxidizing Bacteria: Model Reconstruction and FluxBalance Analysis
9. Prediction of protein druggability by supervised learning approaches
10. Feature set prioritization of metagenomes for predicting colorectalcancer based on multiple human gut microbiome datasets
11. Antimicrobial resistance prediction in Acinetobacter baumannii using collaborative matrix factorization
12. Improving prediction of drug-target interactions based on fusingmultiple features with data balancing and feature selection techniques
13. Molecular design of sgRNA based on CRISPR-Cas۱۳a for specificdetection of ORF۱ab region in SARS-COV-۲ genome infecting Iranianpatients
14. Characterization of chemotherapy resistant triple-negative breastcancers at single-cell resolution
15. Comparative gene co-expression network analysis betweenadenocarcinoma and squamous cell carcinoma subtypes of esophagealcancer
16. Single-cell RNA sequencing data analysis using Explainable ArtificialIntelligence identified key transcriptional factors for early COVID-۱۹severity prediction
17. A Plastic-Contaminated Soil Gene Catalog Constructed byMetagenomic Approaches
18. De novo Antibody design against PD-۱ and PDL-۱ as critical immunecheck points involve in cancer treatment
19. Improvement of peptide-HLA class I prediction using transformers
20. Molecular docking and ADME studies of natural compounds againstprime targets of HIV
21. Investigation of Some Nanobodies against SARS-C۰V-۲ Spike protein by immune-bioinformatics tools
22. Selection of the most effective SARS-C۰V-۲ proteins in order to design a recombinant vaccine by immune-bioinformatics tools
23. Predicting Adverse Drug Reactions Using Computational Methods: An Analysis of Drug and Adverse Reaction Features and Representations
24. Reconstruction of miRNA-mRNA regulatory network in the pediatric Adrenocortical Adenoma
25. The role of circRNA-miRNA-mRNA interaction network in rheumatoid arthritis using transcriptome data analysis
26. Investigating Eugenol-Lysozyme complex using docking and molecular dynamic simulation methods
27. Evaluation of TUBB۳, PSMB۷, CBFB, and COL۹A۱ genes involved in the development of Squamous Cell Lung Cancer (SCC)
28. Identification of the regulatory interactions related to gastric cancer via integrated bioinformatics analysis
29. A Transformer based mutation prediction algorithm
30. The Possible Role of Heat-shock proteins (HSPs) on InflammatoryBowel Disease (IBD): Peptide Motif Analysis as an Immunoinformatic Technique
31. Differential Gene Expression in Rat Middle Cerebral Artery Occlusion Model
32. Identification of key genes and signaling pathways involved in bovine tuberculosis challenged with Mycobacterium bovis: Comparison of RNA-Seq and microarray expression profiling data
33. Comparative transcriptome analysis reveals significant di↵erentially expressed genes in bovine viral diarrhea virus (BVDV) infection
34. Molecular Docking Analysis of gingerol compound of Zingiber o cinale Roscoe against Breast Cancer
35. Using bioinformatics tools to identify pathogenic agents of Cutaneous Leishmaniasis
36. A comparative structural study on two immobilized metagenomic α-amylases by molecular docking
37. The role of Exome Sequencing analysis in the diagnosis of patients with rare neurogenetic disorders
38. Computational identification of driver genes and pathways of chronic lung diseases
39. Bioinformatics evaluation of CFEM gene region in some fungal species
40. Comparison Of Milk Production Parameters In Different Environment Predicted By Non-Linear Model And Artificial Neural Network
41. Haplotype Assembly Problem Models in Diploid and Polyploid Cases
42. The impact of synthetic food colors on target proteins is suspected to have negative e↵ects on the human body, an in silico study
43. Statistical physics approach in epilepsy disease
44. Network Pharmacology Integrated With Experimental Validation andMolecular Docking Revealed the Anti-inflammatory Effects ofCoconut Oil
45. Prediction of a G-Quadruplex Aptamer structure by mFold servers for identification histidine sequence-containing proteins
46. Identification of differentially expressed genes in papillary thyroid cancer patients based on gender
47. Effect of Salt Concentration on Structural Changes of Amyloid β
48. Learning state machines on protein sequences
49. FANCI/ hsa-miR-۳۰b-۳p /LINC۰۱۳۵۵ ceRNA axis can potentially promote Hepatocellular carcinoma by influencing DNA repair pathways
50. In silico exploration of Neohesperidin inhibitory mechanism on TGFpathway and improving its bioavailability
51. In silico study of IMPDH۲ interactions with proteins involved inWnt/ -catenin pathway
52. TRHDE gene and its plausible role in multiple sclerosis
53. Design of Potential Urease inhibitors via Pharmacophore and DockingBased Virtual Screening
54. Integrated single-cell analysis of tumor-infiltrating immune cells reveals key secretory protein-coding genes of astrocytes in glioblastoma
55. Reconstruction of miRNA-mRNA bipartite network in saliva of gastric cancer patients via bioinformatics analysis
56. Application of bioinformatics in cancer diagnosis and prediction
57. Identification of Candidate Genes Associated with Cisplatin Resistance in Ovarian Cancer
58. In Silico Identification of Novel Natural Anti-Cancer Compounds Targeting ITGAV Protein
59. Modeling guanylyl cyclase activating protein ۱ structure
60. Genetic analysis of a missense mutation in the NANOS۲ gene involved in Non-Obstructive Azoospermia based on in-silico pathogenicity prediction tools
61. Phytochemicals as natural anti-obesity agents: Molecular docking and computer-aided drug design
62. An effcient convolutional neural network for diagnosis of Alzheimer’s disease
63. Identification of key genes and regulatory mechanisms in Lupus nephritis pathogenesis
64. Design and molecular docking studies of biuret derivatives as potentialMatrix Metalloproteinases ۹(MMP۹) inhibitors
65. Machine Learning Algorithms Capable of Type ۲ Diabetes MellitusEarly Diagnosis using Explored Important Features
66. Diagnosing MonkeyPox from Skin Indications using ArtificialIntelligence Method
67. Identifying key modules and genes associated with Focal andSegmental Glomerulosclerosis Pathogenesis using an integrated WGCNA and PPI network analysis
68. Bioinformatics-based secretome mining of four Meloidogyne species to recognize effective excretory/secretory proteins for plant pesticide targets
69. Comparison of Sequence- Based Methods for sequence–structure alignment using the results of Picea abies L. genomics analysis
70. Investigating The Second and Third Structure of Squalene Synthetase Transferase Gene in Dracocephalum kotschyi Plant
71. Bioinformatic Investigation Of Protein Stability (SQS) In Prokaryotes and Eukaryotes
72. Saccharum spontaneum transcriptome analysis for identification of the potential genes involved in receptor-mediated nonhost resistance
73. Reconstruction of the Co-expression Network in Pediatric Low-grade Glioma
74. Stoichiometric Metabolic Modelling of Nitrate Reducing Sulfur Oxidizing Bacteria for Wastewater Application
75. The effect of Alzheimer’s drugs on carbonic anhydrase II and brain pH
76. The Molecular Modeling of Vitamin E Arrangement on Fibrous Cellulose Superstructures
77. Molecular docking investigation of vipirinin for colon cancer-related molecular target
78. A comprehensive analysis of a pseudogene/lncRNA-miRNA-mRNA ceRNA network in esophageal cancer
79. Identification of LPIN۱ and MTCO۱P۱۲ genes as gastric cancer-related potential biomarkers based on a ceRNA network
80. Identification of Differentially Expressed Genes in Systemic Lupus Erythematosus Patients, Before and After Initiation of Immunosuppressive Therapy
81. Association of miR-۳۹۱۶ expression with overall survival in breast cancer and identification key pathways and hub genes using bioinformatics analysis
82. Supervised Kohonen networks as tools for virtual screening of PubChem database: A case study with cyclin dependent kinases
83. Identification of ALB as a potential hypoxia-stemness-associated prognostic biomarker in gastric cancer
84. A comparative meta-analysis and in silico analysis on metabolomics Profiles in Nephrotic Syndrome for Biomarker Discovery
85. In silico evaluation of the interactions of CLOCK-BMAL۱ complex with IMPDH۲
86. The effect of mating design on genetic gain and inbreeding
87. The effect of genomic accuracy on interaction between genotype and environment
88. Bioinformatic identification of miR-۴۶۴۵ hub target genes and experimental validation of the miR-۴۶۴۵ in breast cancer
89. A survival-related competitive endogenous RNA (ceRNA) network of lncRNAs, miRNAs and mRNAs associated with gastric cancer
90. Comprehensive bioinformatics analysis for Identification of PotentialCrucial Genes and Key Pathways in Early Diagnosis of GastricCancer: Helicobacter pylori (Follicular gastritis) Induced Chronic Gastritis with Increasing Risk of Gastric Cancer
91. Breast milk DNA methylation-based potential prognostic biomarkers of triple-negative breast cancer
92. Integrated bioinformatics analysis revealed that hub genes correlated with the prognosis and pathogenesis of gastric cancer
93. The Application of Consensus Weighted Gene Co-expression NetworkAnalysis in Celiac Disease: Identification of Potential Protective Genes and Pathways
94. Prediction of key responsive genes to environmental stresses in Thermus thermophilus by using SVM-RFE
95. Identification key responsive genes to some environmental stresses in Thermus thermophilus by using computational biology approaches
96. An analysis of bioinformatics on the antiviral activity and effectiveness of vitamins in treating monkeypox
97. Power Domination Set-based Algorithm for Identification of KeyGenes in Lung Adenocarcinoma
98. Integrated Bioinformatics Analysis For Differentially Expressed Genes,Micrornas And Pathways Identification In Age-Related Macular Degeneration
99. In Silico Analysis of Novel VHL Germline Mutations in Iranian RCH Patients
100. Computational Designing the Ligands of Protein L Affinity Chromatography Based on Molecular Dynamics Simulations
101. Computational engineering of Protein L ligands to achieve an optimal a nity resin for purification of antibody fragments
102. Prediction of interaction network of altered proteins, kinases and transcription factors, miRNAs, lncRNA in breast cancer disease
103. Examining protein expression patterns in breast cancer compared to healthy group by bioinformatics
104. Selection of antibacterial peptides against methicillin-resistant Staphylococcus aureus by bioinformatics and laboratory integration methods
105. venom gland Transcriptome analysis of Iranian yellow scorpion,“Odontobuthus doriae” derived some putative antimicrobial peptide with anti-SARS-CoV-۲ effect
106. Genomic analysis of the ASMT gene family in Cicer arietinum
107. Investigating the pathway of resistance to Ciprofloxacin inCampylobacter jejuni by using microarray analysis
108. Identification Of Hub Genes, microRNAs And Key Pathways Associated With Bladder Cancer
109. Molecular dynamic simulation of Buforin IIb anticancer peptide with POPC-Cholesterol model membrane
110. Examining the similarity of Hsp۹۰ sequence amongst different Aspergillus species
111. A brief bioinformatic survey on Colletotrichum species complex
112. Are Repetitive Motifs of LEAp Chaperones the Main Bodyguards ofTarget Proteins?: in silico Prediction
113. Identification of sodium alendronate derivatives as purple acid phosphatase inhibitors and promising candidates for osteoporosis therapeutics: in silico studies
114. Molecular Docking of DEP B enzyme with DON mycotoxin chemotype (۱۵ADON): In-silico analysis
115. Molecular docking of rat myostatin with human follistatin: an in-silico analysis
116. In silico Molecular Docking simulation of Antiviral Peptide Cathelicidin LL-۳۷ with Acyclovir
117. Co-expression network analysis revealed ATP۶AP۱-DT, andTRIM۵۲-AS۱ as potential therapeutic lncRNAs in hepatocellular carcinoma
118. Analysis of TPD۵۲ gene in prostate adenocarcinoma and probability analysis of rs۷۵۷۴۴۳۸۳۱ in hsa-mir-۳۳a-۵p
119. Using Proteochemometrics models to predict interaction between isoforms of caspase and their inhibitors
120. A mathematical model involving the effect of face masks in the control of COVID-۱۹
121. Molecular dynamics (MD) simulation study on holo and apo forms of the ALS-linked hSOD۱ mutation
122. Prediction of the Binding Site of Kryptofix-۲۲۱ to Na-dependent β-Galactosidase: A Molecular Docking study
123. Phylogenetic study of L-asparaginase II (AsnB) in the bacteria domain and fungi kingdom
124. Towards enhancing L-Asparaginase stability by computational-structural modeling
125. In-silico emplacement of curcumin on higher-order assemblies of cellulose nanofibers
126. Identifying Potential Inhibitory Ligands Against α۲ receptor
127. A comprehensive bioinformatic evaluation the NTRK family as prognostic biomarkers in breast cancer
128. Gene selection in classifying Alzheimer’s disease using a statistical, biological, and artificial intelligence-based pipeline
129. Investigation miRNAs that might attenuate Diabetes and PolycysticOvary Syndrome: an In-silico study
130. Genome expression profiling of the human brain affected by Mirtazapine through transcriptomics data analysis
131. New Encoding Model Based on gRNA-DNA Pairs to Predict off-target Effects of Genome Editing with CRISPR/Cas۹
132. Identification of key genes in non-functioning pituitary adenoma using gene expression profile and protein-protein interaction network
133. Drug-Disease data integration for drug repurposing using deep neural networks
134. Phylogenetic and structural analysis of native avian influenza subtype H۹N۲ hemagglutinin isolated
135. A sequence and structure analysis on the Human Arc protein
136. Identification of the Genes and Pathways in Glioblastoma cell lines by bioinformatics analysis
137. Systems Biology Assessment and Transcriptome Analysis of the Interaction of Probiotic and Host in the Anti-Inflammatory Process
138. Inhibition of competitive pathways to increase butanetriol production in the Escherichia coli through metabolic network simulation
139. CCL۲۰ and CNTNAP۳C as prognostic biomarkers and therapeutic targets in HCT۱۱۶ cell lines treated with Fusobacterium nucleatum for colorectal cancer metastasis
140. Phylogenetic analysis of amino acids in baculovirus enhancins
141. In silico analysis of baculovirus enhancin genes
142. Identification of Biomarkers Involved in Adrenocortical Carcinoma bySystems Biology Approach
143. Investigate effects of plant secondary metabolites Compared with standard drugs on SARS-CoV-۲ by Molecular Docking and Molecular Dynamics
144. The effect of L۸۱۳N|A۸۱۴R double mutations on Taq polymerase structure
145. Identification of potential therapeutic microRNAs for gastric cancer based on bioinformatics analysis
146. Preeclampsia: Ranking the genes and associated biological functions
147. Enhancement of In-hospital Mortality Prediction in EmergencyDepartment using Ensemble Machine Learning Models
148. Investigation effect of Pembrolizumab antibody combined withNapabucasin compared with Pembrolizumab on the gene expression profiling in colorectal cancer based whole transcriptome RNA-Seq analysis
149. In-silico docking and virtual screening of natural products as possible BACE۱ inhibitors: a new hope for treatment of Alzheimer’s disease?
150. Molecular screening and docking analysis of natural GSK۳B inhibitors: A promising target for Alzheimer’s disease
151. Identification of hub genes and key signaling pathways of ascites-derived ovarian cancer stem cells from different origins and associated with clinicopathological features
152. Study of the Gene Network effective on Bovine Mastitis underMicroarray data
153. Evaluation of Protein Clusters in Wool Fiber Production Using Interaction Map Analysis
154. Molecular docking and ADME studies of natural compounds against bitter taste receptors( TAS۲Rs )
155. Cell Spatial Distribution Patterns of Human Distal Lung
156. Unraveling the Complexity of rhizosphere microbiome affecting the quality of Crocus sativus
