Comprehensive Multi-Omics Analysis RevealsNPC۲ and ITGAV Genes as Potential Prognostic Biomarkersin Gastrointestinal Cancers

سال انتشار: 1402
نوع سند: مقاله کنفرانسی
زبان: انگلیسی
مشاهده: 75

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شناسه ملی سند علمی:

CGC01_028

تاریخ نمایه سازی: 29 آبان 1402

چکیده مقاله:

Background: Gastrointestinal cancers (GICs) continue to dominatein terms of both incidence and mortality worldwide. Dueto the absence of efficient and accurate prognostic biomarkers,the prognosis and treatment outcomes of many GICs are poor.Identifying biomarkers to predict individual clinical outcomesefficiently is a fundamental challenge in clinical oncology. Althoughseveral biomarkers have been continually discovered,their predictive accuracy is relatively modest, and their therapeuticuse is restricted. In light of this, the discovery of reliablebiomarkers for predicting prognosis and outcome in GIC is urgentlyrequired.Materials and Methods: We evaluated the HPA dataset andidentified NPC۲ and ITGAV as probable poor predictive genesfor these cancers. In addition, we used the GEPIA۲, cBio-Portal, UALCAN, LinkedOmics, STRING, Enrichr, TISDB,TIMER۲.۰, hTFTarget, miRTarBase, circBank, and DGIdb databasesto conduct a comprehensive and systematic analysis ofthe NPC۲ and ITGAV genes.Results: Our results found high expression levels of NPC۲ and ITGAV in most GICs. The aforementioned gene expressionswere linked to several clinicopathological characteristicsof GICs as well as poorer prognosis in LIHC and STAD. Themost common alteration type of NPC۲ was amplification, andfor ITGAV was deep deletion. Significant promotor hypermethylationwas also seen in NPC۲ and ITGAV in PAAD andCOAD, respectively. For the immunologic significance, NPC۲and ITGAV were positively correlated with the abundance oftumor-infiltrating lymphocytes and macrophages. Furthermore,various immuno-modulators showed strong correlations withthe expression of these genes. There were currently ten smallmolecule drugs targeting ITGAV.Conclusion: Consequently, our bioinformatics analysis showedthat NPC۲ and ITGAV might be used as potential biomarkers todetermine the prognosis of various GICs and are also related toimmune infiltration

نویسندگان

Moein Piroozkhah

Basic and Molecular Epidemiology of Gastrointestinal DisordersResearch Centre, Research Institute for Gastroenterology andLiver Diseases, Shahid Beheshti University of Medical Sciences,Tehran, Iran

zahra salehi

Department of Immunology, School of Medicine, Tehran Universityof Medical Sciences, Tehran, Iran

Mohammad Reza Zabihi

Department of Immunology, School of Medicine, Tehran Universityof Medical Sciences, Tehran, Iran

Pooya alali

Basic and Molecular Epidemiology of Gastrointestinal DisordersResearch Centre, Research Institute for Gastroenterology andLiver Diseases, Shahid Beheshti University of Medical Sciences,Tehran, Iran