Integrating machine learning and data analysis for predictive microbial community profiling

سال انتشار: 1402
نوع سند: مقاله ژورنالی
زبان: انگلیسی
مشاهده: 36

فایل این مقاله در 19 صفحه با فرمت PDF قابل دریافت می باشد

استخراج به نرم افزارهای پژوهشی:

لینک ثابت به این مقاله:

شناسه ملی سند علمی:

JR_CJES-21-5_020

تاریخ نمایه سازی: 31 خرداد 1403

چکیده مقاله:

Microbiome research has gained prominence for its crucial role in various domains, from human health to environmental ecosystems. Understanding and predicting microbial community composition is essential for unlocking the potential of microbiomes. In this paper, we present a novel approach that leverages the synergy between machine learning and data analysis techniques to comprehensively profile and predict microbial communities. Our study addresses the current challenges in microbiome analysis by proposing a unified framework that integrates multiple data types, including ۱۶S rRNA gene sequencing, metagenomic, and environmental data. We employ advanced machine learning algorithms, such as deep learning models and ensemble techniques, to extract meaningful patterns and relationships from these complex datasets. This integrated approach not only captures the taxonomic composition of microbial communities but also reveals functional potentials and ecological interactions among microbial taxa. One of the key novelties of our work lies in the development of a predictive model for microbial community assembly. By incorporating ecological principles and community dynamics, our model can forecast how microbial communities respond to environmental changes or perturbations, providing valuable insights for ecosystem management and restoration efforts. Furthermore, we demonstrate the practical applicability of our approach in diverse scenarios, including clinical microbiology, environmental monitoring, and biotechnological processes. We showcase its accuracy in predicting shifts in microbial community structure under varying conditions, offering a powerful tool for preemptive interventions in disease prevention and bioprocess optimization. We introduce an innovative methodology that bridges the gap between microbiology and machine learning, facilitating a deeper understanding of microbial ecosystems and their functional roles. By unifying data analysis and predictive modeling, our approach has the potential to revolutionize the way we study and harness the power of microbiomes, with far-reaching implications in healthcare, agriculture, and environmental conservation.

نویسندگان

Sagyndykova Sofiya Zulcharnaevna

Atyrau University named after Kh. Dosmukhamedov Atyrau, Kazakhstan & Atyrau, Studenchesky Ave., ۱ ۰ Atyrau, Studenchesky Ave, ۰۶۰۰۰۰ Atyrau, the Republic of Kazakhstan

Kuspangaliyeva Khansulu

Khalel Dosmukhamedov Atyrau University, ۰۶۰۰۱۱ Atyrau, student Ave., ۲۱۲, Atyrau city, Kazakhstan

Sekerova Tolganai

Institute of Natural Sciences and Geography of the Kazakh National Pedagogical University named after Abai, Dostyk Ave., ۱۳, Almaty, Kazakhstan

Saimova Rita

Institute of Natural Sciences and Geography, Abai Kazakh National Pedagogical University, Dostyk Av., Almaty, Kazakhstan

Bekenova Nazym

Department of Biology, Institute of Natural Sciences and Geography, Abai Kazakh National Pedagogical University, ۱۳, Dostyk Av., ۰۵۰۰۱۰, Almaty, Kazakhstan

Kamiyeva Gulzhanat

Department of Biology, Institute of Natural Sciences and Geography, Abai Kazakh National Pedagogical University, ۱۳, Dostyk Av., ۰۵۰۰۱۰, Almaty, Kazakhstan

Yessimov Bolat

Institute of Natural Sciences and Geography, Abai Kazakh National pedagogical university, ۱۳, Dostyk Av., ۰۵۰۰۱۰, Almaty, Kazakhstan,

Zhanna Adamzhanova

High School of Natural Sciences of Astana International University, ۸ Kabanbay Batyra Av., ۰۰۰۰۱۰, Astana, Kazakhstan

مراجع و منابع این مقاله:

لیست زیر مراجع و منابع استفاده شده در این مقاله را نمایش می دهد. این مراجع به صورت کاملا ماشینی و بر اساس هوش مصنوعی استخراج شده اند و لذا ممکن است دارای اشکالاتی باشند که به مرور زمان دقت استخراج این محتوا افزایش می یابد. مراجعی که مقالات مربوط به آنها در سیویلیکا نمایه شده و پیدا شده اند، به خود مقاله لینک شده اند :
  • Benn, AML, Heng, NCK, Broadbent, JM & Thomson, WM ۲۰۱۸, ...
  • Berg, G, Rybakova, D, Fischer, D, Cernava, T, Vergès, MCC, ...
  • Bharti, R & Grimm, DG ۲۰۲۱, Current challenges and best-practice ...
  • Bissett, A, Brown, MV, Siciliano, SD, & Thrall, PH ۲۰۱۳, ...
  • Cai, L, Li, H, Deng, J, Zhou, R & Zeng, ...
  • Chattopadhyay, I, Lu, W, Manikam, R, Malarvili, MB, Ambati, RR ...
  • Comin, M, Di Camillo, B, Pizzi, C & Vandin, F ...
  • Corner, RD, Cribb, TH & Cutmore, SC ۲۰۲۳ Rich but ...
  • Davenport, F, Gallacher, J, Kourtzi, Z, Koychev, I, Matthews, PM, ...
  • De Meaux, J & Mitchell-Olds, T ۲۰۰۳, Evolution of plant ...
  • de Vasconcelos Gomes, LA, de Faria, AM, Braz, AC, de ...
  • Ebrahimi, SS, Pourbabaei, H & Pothier, D ۲۰۱۸, The effect ...
  • Eicher, T, Kinnebrew, G, Patt, A, Spencer, K, Ying, K, ...
  • Graw, S, Chappell, K, Washam, CL, Gies, A, Bird, J, ...
  • Harris, J ۲۰۰۹ Soil microbial communities and restoration ecology: facilitators ...
  • Hewavitharana, SS, Klarer, E, Reed, A J, Leisso, R, Poirier, ...
  • Hu, Y, Łukasik, P, Moreau, CS & Russell, JA ۲۰۱۴, ...
  • Idrisovich Ismagilov, I, Ayratovich Murtazin, A, Vladimirovna Kataseva, D, Sergeevich ...
  • Janda, JM & Abbott, SL ۲۰۰۷ ۱۶S rRNA gene sequencing ...
  • Javidan, P, Baghdadi, M, Torabian, A & Goharrizi, BA ۲۰۲۲, ...
  • Kaul, A, Davidov, O & Peddada, SD ۲۰۱۷ Structural zeros ...
  • Mohammed Al-Shemmary, AJ & Salih Al-Taee, MM ۲۰۲۱, Response of ...
  • Molloy, MP, Brzezinski, EE, Hang, J, McDowell, MT & VanBogelen, ...
  • Narayanan, M, Ali, SS & El-Sheekh, M ۲۰۲۳ A comprehensive ...
  • Nejatian, N, Yavary Nia, M, Yousefyani, H, Shacheri, F & ...
  • Odom, AR, Faits, T, Castro-Nallar, E, Crandall, KA & Johnson, ...
  • Polia, F, Pastor-Belda, M, Martínez-Blázquez, A, Horcajada, MN, Tomás-Barberán, FA ...
  • Poussin, C, Sierro, N, Boué, S, Battey, J, Scotti, E, ...
  • Qu, F, Cheng, H, Han, Z, Wei, Z & Song, ...
  • Rohlfing, C, Wiedmeyer, HM, Little, R, Grotz, VL, Tennill, A, ...
  • Saeidi, S, Enjedani, SN, Behineh, EA, Tehranian, K & Jazayerifar, ...
  • Tehranian, K ۲۰۲۳b, Monetary Policy & Stock Market. arXiv preprint ...
  • Thatoi, H, Behera, B C, Mishra, R R, & Dutta, ...
  • Wang, X, Feng, J, Ao, G, Qin, W, Han, M, ...
  • Wang, H, Liu, X, Wang, Y, Zhang, S, Zhang, G, ...
  • Worby, CJ, Sridhar, S, Turbett, SE, Becker, MV, Kogut, L, ...
  • Xu, Z & Knight, R ۲۰۱۵, Dietary effects on human ...
  • نمایش کامل مراجع