RT-LAMP assay for ultra-sensitive detection of SARS-CoV-۲ in comparison with RT-qPCR

سال انتشار: 1402
نوع سند: مقاله کنفرانسی
زبان: انگلیسی
مشاهده: 457

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شناسه ملی سند علمی:

EITCONF02_165

تاریخ نمایه سازی: 3 مهر 1402

چکیده مقاله:

To combat the COVID-۱۹ pandemic, it is critical to quickly and accurately detect SARS-CoV-۲ infection in patients since there are currently no effective antiviral drugs or vaccines available. This study aimed to create and evaluate a rapid One-Step LAMP assay that can directly detect SARS-CoV-۲ RNA from nasopharyngeal swab samples of patients suspected of having the infection in comparison with RT-qPCR assay. In this research, a crosssectional survey involved testing ۲۲۵ nasopharyngeal swab samples from patients suspected of having COVID-۱۹ using two different methods: OneStep RT-qPCR and One-Step LAMP assay. The One-Step LAMP assay directly amplified the extracted RNA from the SARS-CoV-۲ nasopharyngeal sample using a new version of the key enzyme of the LAMP reaction called Bst DNA/RNA Polymerase ۳.۰ (Bst ۳). The study evaluated the accuracy and reliability of the One-Step LAMP assay by comparing it with One-Step RTqPCR using positive and negative clinical samples of COVID-۱۹. Out of the ۲۲۵ participants, the One-Step RT-qPCR and One-Step LAMP assays detected positive SARS-CoV-۲ results in ۱۱۵(۵۱.۱%) and ۱۱۰(۴۸.۸%) participants, respectively. The Cohen's kappa coefficient (κ) demonstrated that there was a ۹۷% agreement rate between the two tests, which was statistically significant (P <۰.۰۰۱), The study found a significant relationship (P <۰.۰۰۱) between the variables of residency, clinical signs of sore throat, fever and chills, shortness of breath, underlying health conditions (UHC), LICT, and infection with SARS-CoV-۲. The study concluded that the One Step LAMP assay is an effective method for detecting SARS-CoV-۲ in suspected patients compared to the One-Step RT-qPCR method due to its low cost, simplicity, sensitivity, and specificity. Therefore, the One-Step LAMP assay has significant potential as a valuable diagnostic tool for disease control, timely treatment, and protecting public health during epidemics.

نویسندگان

Seyed Mohammad Ghorbani Dazmiri

Faculty of Biological Sciences, Sari Branch, Islamic Azad University, Sari, Iran

Seyyed Danial Mirmiran

State Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University Wuhan, China

FatemehSadat Abolhasani

Department of Microbiology, Faculty of Biological Sciences, Alzahra University, Tehran ,Iran

Elmira Karimonafs

Department of Microbiology, Faculty of Biological Sciences, North Tehran Branch, Islamic Azad University, Tehran, Iran

Parivash Ghaderinia

Department of Microbiology, Zanjan Branch, Islamic Azad University, Zanjan, Iran

Shila Fallahpour

Department of Biology, Biological Science Faculty, Islamic Azad University of Falavarjan, Isfahan, Iran