The Phylogenetic Relationships within the Tribe Bovini (Bovidae: Bovinae) Using Mitochondrial Genome

سال انتشار: 1400
نوع سند: مقاله ژورنالی
زبان: انگلیسی
مشاهده: 240

فایل این مقاله در 14 صفحه با فرمت PDF قابل دریافت می باشد

استخراج به نرم افزارهای پژوهشی:

لینک ثابت به این مقاله:

شناسه ملی سند علمی:

JR_SGR-7-1_002

تاریخ نمایه سازی: 6 اردیبهشت 1400

چکیده مقاله:

Molecular data are powerful tools to resolve taxonomic problems. Each gene in each taxon shows a degree of variation through which we can understand phylogenetic relationships among different taxa. In this survey, the phylogenetic relationships within the tribe Bovini were reevaluated using ۲۴ mitogenomes and cytochrome b (cytb), cytochrome c oxidase subunit ۱ (cox۱), ۱۶S ribosomal RNA (۱۶S rRNA), and NADH dehydrogenase subunit I (ND۱) mitochondrial markers. We used all the gene sequences of extinct, domesticated, and wild species within the tribe Bovini. The phylogenetic trees were reconstructed using the maximum likelihood (ML) method. Based on the mitogenomes, the average base composition of mtDNA sequences was ۲۷.۱% T, ۲۶% C, ۳۳.۵% A, and ۱۳.۴% G, showing a strong AT bias (۶۰.۶%). Our results revealed that the genus bison is not an independent taxon in the taxonomic rank of the genus and it is completely a paraphyletic taxon. Saola (Pseudoryx nghetinhensis) showed a sister relationship with other species belonging to the subtribe Bovina and it might be better to place this species within the subtribe Bovina. Also, in the mentioned subtribe, we distinguished three distinct monophyletic groups. In all of the phylogenetic trees, the subtribe Bubalina was a monophyletic taxon, and Syncerus caffer had a sister group relationship with other species belonging to the genus Bubalus. The obtained data should be taken into consideration in future conservation efforts for this tribe.

کلیدواژه ها:

نویسندگان

Taghi Ghassemi-Khademi

Department of Biology, Faculty of Sciences, Shiraz University, Shiraz, Iran

Seyed Massoud Madjdzadeh

Department of Biology, Faculty of Science, Shahid Bahonar University of Kerman, Kerman, Iran

Rasoul Khosravi

Department of Natural Resources and Environmental Engineering, School of Agriculture, Shiraz University, Shiraz, Iran

Asadollah Asadi

Department of Biology, Faculty of Science, University of Mohaghegh Ardabili, Ardabil, Iran

مراجع و منابع این مقاله:

لیست زیر مراجع و منابع استفاده شده در این مقاله را نمایش می دهد. این مراجع به صورت کاملا ماشینی و بر اساس هوش مصنوعی استخراج شده اند و لذا ممکن است دارای اشکالاتی باشند که به مرور زمان دقت استخراج این محتوا افزایش می یابد. مراجعی که مقالات مربوط به آنها در سیویلیکا نمایه شده و پیدا شده اند، به خود مقاله لینک شده اند :
  • Abdilzadeh R, Aliabadian M, Olsson U. 2019. A Molecular assessment ...
  • Achilli A, Olivieri A, Pellecchia M, Uboldi C, Colli L, ...
  • Aliabadian M, Nijman V, Mahmoudi A, Naderi M, Vonk, Vences ...
  • Anderson S, De Bruijn MHL, Coulson AR, Eperon IC, Sanger ...
  • Bibi F. 2013. A multi-calibrated mitochondrial phylogeny of extant Bovidae ...
  • Buntjer JB, Otsen M, Nijman IJ, Kuiper MTR, Lenstra JA. ...
  • Castelló JR. 2016. Bovids of the world: Antelopes, Gazelles, Cattle, ...
  • Chunnian L, Wu X, Ding X, Wang H, Guo X, ...
  • Colagar A, Karimi F. 2014. Large scale deletions of the ...
  • Colagar A, Mosaieby E, Seyedhassani SM, Mohajerani M, Arasteh A, ...
  • Edwards CJ, Magee DA, Park SD, McGettigan PA, Lohan AJ, ...
  • Excoffier L, Laval G., Schneider S. 2005. Arlequin (version 3.0): ...
  • Felsenstein J. 1985. Confidence limits on phylogenies: An approach using ...
  • Fernández MH, Vrba ES. 2005. A complete estimate of the ...
  • Gatesy J, Arctander P. 2000. Hidden morphological support for the ...
  • Geraads D. 1992. Phylogenetic analysis of the tribe Bovini (Mammalia: ...
  • Ghassemi-Khademi T. 2017. Evaluation of phylogenetic relationships of Antilopini and ...
  • Ghassemi-Khademi T, Hamidi K. 2019. Re-evaluation of Molecular Phylogeny of ...
  • Ghassemi-Khademi T, Madjdzadeh SM. 2019. Phylogenetic Relationships within the Tribe ...
  • Groves C, Grubb P. 2011. Ungulate Taxonomy. Johns Hopkins University Press, ...
  • Groves CP. 1981. Systematic relationships in the bovini (Artiodactyla, Bovidae). J Zool Syst ...
  • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor ...
  • Hartl GB, Göltenboth R, Grilltsch M, Willing R. 1988. On ...
  • Hasegawa M, Kishino H, Yano TA. 1985. Dating of the ...
  • Hassanin A, An J, Ropiquet A, Nguyen TT, Couloux A. ...
  • Hassanin A, Delsuc F, Ropiquet A, Hammer C, Van Vuuren ...
  • Hassanin A, Ropiquet A. 2004. Molecular phylogeny of the tribe ...
  • Hassanin A. 2014. Systematic and Evolution of Bovini. Part 1, ...
  • Hiendleder S, Lewalski H, Janke A. 2008. Complete mitochondrial genomes ...
  • Janecek LL, Honeycutt RL, Adkins RM, Davis SK. 1996. Mitochondrial ...
  • Li MW, Lin Q, Wang YZ, Huang JX, Qiu HJ. ...
  • Li SP, Chang H, Ma GL, Cheng HY. 2008. Molecular ...
  • Lin Q, Li MW, Wang YZ, Qiu HJ. 2020. Determination ...
  • MacEachern S, McEwan J, Goddard M. 2009a. Phylogenetic reconstruction and ...
  • MacEachern S, McEwan J, McCulloch A, Mather A, Savin K, ...
  • Marsolier-Kergoat MC, Palacio P, Berthonaud V, Maksud F, Stafford T, ...
  • Matthee CA, Davis SK. 2001. Molecular insights into the evolution ...
  • McKenna MC, Bell SK. 1997. Classification of mammals: above the species ...
  • Miyamoto MM, Tanhauser SM, Laipis PJ. 1989. Systematic relationships in ...
  • Nijman IJ, Van Boxtel DC, Van Cann LM, Marnoch Y, ...
  • Nowak RM. 1999. In Walker’s mammals of the world. J ...
  • Palacio P, Berthonaud V, Guérin C, Lambourdière J, Maksud F, ...
  • Posada D, Crandall KA. 1998. Modeltest: testing the model of ...
  • Prusak B, Grzybowski G, Ziêba G. 2004. Taxonomic position of ...
  • Qiu Q, Zhang G, Ma T, Qian W, Wang J, ...
  • Ritz LR, Glowatzki‐Mullis ML, MacHugh DE, Gaillard C. 2000. Phylogenetic ...
  • Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference ...
  • Schwarz G. 1978. Estimating the dimension of a model. Ann Stat ...
  • Smith DR. 2011. Asian honeybees and mitochondrial DNA. In Honeybees ...
  • Srirattana K, McCosker K, Schatz T, John JCS. 2017. Cattle ...
  • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands ...
  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. ...
  • Tamura K. 1992. Estimation of the number of nucleotide substitutions ...
  • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving ...
  • Verkaar EL, Nijman IJ, Beeke M, Hanekamp E, Lenstra JA. ...
  • Wall DA, Davis SK, Read BM. 1992. Phylogenetic relationships in ...
  • Węcek K, Hartmann S, Paijmans JL, Taron U, Xenikoudakis G, ...
  • Win NZ, Choi EY, Park J, Park JK. 2017. Molecular ...
  • Wright S. 1984. Evolution and the genetics of populations, experimental results ...
  • Xuan TP, Georgescu SE, Manea MA, Hermenean AO, Costache M. ...
  • Yang C, Xiang C, Qi W, Xia S, Tu F, ...
  • نمایش کامل مراجع