لیست و عناوین مقالات نمایه شده از دوازدهمین همایش ملی و سومین همایش بین المللی بیوانفورماتیک به صورت زیر می باشد:
1. Identification of Novel miRNAs Encoded by MSI۱ Gene Using Bioinformatic andExperimental Methods
2. Molecular docking simulation of Anticancer properties of Cisplatin as an ovarian cancer inhibitor
3. Enhancing Heart Failure Prediction Accuracy through Effective Preprocessing andPrincipal Component Analysis
4. Molecular docking simulation of Antibacterial properties of Teixobactin as Bacillus anthracis inhibitor
5. Distribution of Estrogen Receptor ۱ (ESR۱) gene (rs۲۲۳۴۶۹۳) polymorphism among breast cancer patients from Mazandaran province, Iran; a case-control study
6. FN۱, COMP, and CXCL۵, serve as diagnostic biomarkers for pancreatic cancer, as revealed through analysis of microarray data
7. Pathogenicity prediction of a missense mutation (p.Pro۲۵۰Arg) in the FGFR۳ gene associated with achondroplasia
8. Identification and Analysis of Crucial Genes Underlying Gastric Cancer via Bioinformatics Techniques
9. Prediction of Pathogenicity of rs۱۲۵۲۶۹۲۷۳۲ p.Gly۱۵۱Val missense mutation (rs۱۲۵۲۶۹۲۷۳۲) in MTTP Gene Associated with Abetalipoproteinemia by BioinformaticsTools
10. A Bioinformatics study: predicting the pathogenicity of two SNPs in the CFTR gene which is associated with Cystic Fibrosis (CF) disease
11. Identification of hub genes as novel biomarkers in Ovarian Cancer using High-Throughput Transcriptome data analysis
12. Computational Modeling and Machine Learning Evaluation of Factors Impacting Regional Nasal Dosage Delivery for Micro-Sized Peptide-Based Therapeutics
13. Revolutionizing NSCLC Treatment: Exploring the Potential of In Silico-designed Multiepitope Vaccines
14. Pathogenicity prediction of a single nucleotide polymorphism (rs۱۰۴۸۹۴۱۰۷: p.G۱۳۰V) in human FXN gene
15. lactate dehydrogenase A inhibition via peptides to regulate the Warburg effect: cell signaling analysis
16. Using the recommended protein marker gpd to investigate the phylogeny relationships among ۲۳ species of bioindicator fungal genus Lactarius
17. Molecular Modeling of Monomeric Spike SARS-CoV-۲ - Ferritin Nanoparticle Vaccine
18. Transfer Learning Based on DenseNet-۱۲۱ Model: A Deep Learning Approach to Promote Detecting Breast Cancer in Thermogram
19. Semantic Segmentation Based on Artificial Intelligence: An Effective Paradigm for Automated Estimation of Fetal Head Circumference in Ultrasound Images
20. Bioinformatics approach for shedding light on controversial information of IGF۱/۲ expression pattern in hepatocellular carcinoma
21. From Melanoma to Skin Aging: The Impact of DCT and TYRP۱ in Melanogenesis
22. Expression data from human breast tumors and their paired normal tissues proteinprotein interaction
23. An in-silico study on some synthesized triazole derivatives as tyrosinase inhibitors
24. Identification of biomarkers for breast cancer in different reproductive ages using computational methods
25. c.۵۲۴۴ del G: A Novel Mutation in the ABCA۴ Gene is Associated with Retinitis Pigmentosa
26. Molecular profiling of downregulated genes in T-DM۱ resistance: insights from OE-۱۹ esophageal cancer cells
27. Re-purposing Clove Oil in Ovarian Cancer Treatment: A Multi-Dimensional Approach Involving Bulk RNA-Seq and scRNA-SeqDescription
28. Prediction of pathogenicity of rs۱۸۰۰۷۵۱ (Pro۱۸۱۲Thr) nucleotide change in BRCA۱ gene related to breast cancer by bioinformatics tools
29. Solubility, mathematical modeling and thermodynamic properties of budesonide solubility in ۱-Propanol+Water from T = (۲۹۳.۲ to ۳۱۳.۲) K
30. In silico discovery of small-molecule K-Ras inhibitor
31. A whole genome sequencing approach for unraveling the genetic basis of antibiotic resistance in Iranian Helicobacter pylori isolates
32. Stabilization of Aspergillus flavus urate oxidase enzyme by site-directed mutagenesis
33. Evaluation of neural network for computing accuracy of genomic breeding value
34. A Hybrid Deep Learning-based Model for Off-target Prediction in CRISPR System
35. Computational Designing of Chimeric Antigen Receptor Extracellular Regions: Homology modelling, Docking and Molecular Dynamic Simulations
36. Binary Gravitational Search Algorithm Feature Selection method for DTI
37. Omics Technologies and Data mining approaches in Canine Osteosarcoma: Insights from High-Throughput Genetics and Bioinformatic Analysis
38. Analyzing Monomeric and Dimeric ORF۸ Interactions with Antiviral Small Molecules
39. Identification of specific gene modules related to the Meyloid Blast Crisis (MBC) phase of CML Using MAGI Algorithm
40. Efficient classification of single cell ATAC sequence data using machine learning
41. Unraveling Therapeutic Prospects for Endometriosis: Modulating AKT۱ with an Established Breast Cancer Drug, Capivasertib
42. The role of imatinib on the differentiation genes expression in K۵۶۲ cell line: A bioinformatic study
43. Computational vaccine designing against Nipah virus G and F proteins using structural modeling and dynamic simulations
44. Evaluation of ۵-fluorouracil related genes in breast cancer involved in the microtubule structure
45. Mathematical modeling for azole drugs solubility in the binary solvent systems at various temperatures
46. Analysis of Co-Expression Network of BMPR۱B Gene with Other Genes Involved in litter Size of Sheep
47. Association of IL۱۸ and CSF۱R overexpression leads to immunosuppressive phenotypes in microglial cells in GBM microenvironment: A transcriptome-wide meta-analysis
48. Integration of genomic data and machine learning to identify signature genes in pyroptotic cell death in neural cells of AD patients
49. Celastrol strongly binds to AMPK activating site: A docking study
50. Understanding the Activity of BMPR۱B within the BMP/SMAD Pathway in Sheep
51. Deciphering transcriptomic signatures in myotonic dystrophy: a bioinformatics casecontrol study
52. The impact of adding a functional group to the antimalarial drug Artemisinin on its penetration into biological membranes using molecular dynamics simulation
53. Comparison of the toxicity of Doxorubicin in water and natural deep eutectic solvents based on choline chloride by molecular dynamics simulation
54. Drug design for the treatment of autoimmune diseases by Increasing the binding affinity of IL-۲۱R Protein to IL-۲۱
55. Predicting the pathogenicity of a missense mutation (Glu۸۸Lys) in the NCAPG gene involved in childhood hepatocellular carcinoma using bioinformatics tools
56. Bioinformatics Analysis of Microarray Data to Identify Hub Genes as Novel Biomarkers for Colorectal Cancer
57. Identification of potential inhibitors of kidney glutaminase using molecular docking simulations
58. In-silico Comparison of Interaction Some Bee Venom Peptides with the Mouse mMHCMOG: ۳۷-۴۶ complex as a Potential Treatment of MS Disease
59. Unraveling Protein Dynamics in the Presence of Cellulose Nanocrystals: An Essential ۱Dynamics Analysis
60. Designing mutated protein with increased binding affinity to Il-۲۲ in
61. Prediction of Pathogenicity of a Single Nucleotide Polymorphism (rs۲۱۳۳۷۸۵۶۹۳) in human CDKN۱C gene Associated with Wilms Tumor
62. In Silico Design of a Novel Antibody-Drug Conjugate Targeting Mesothelin in Pancreatic Cancer
63. Morbillivirus Cellular Receptor Interaction: Introduce Potential Important RegionsInvolved in Novel Cellular Receptor
64. Multi-Omics Integration for Pancreatic Adenocarcinomas Subtyping
65. Predicting Functional miRNA Targets in C-Fos with High Accuracy via Machine Learning
66. Deciphering the c-MYC miRNA Regulatory Network through Machine Learning
67. Drug repositioning and the candidates' mechanism of action for vitiligo
68. Investigation of the internal co-expression relationship evolution in chronic rhinosinusitis with nasal polyps
69. Unlocking Drug Combinations: A Novel Graph-Based Approach for Predicting Anti-Cancer Synergy
70. Functional investigation of MYL۹ gene in signaling pathways and gene networks in chicken
71. Comprehensive discovery of markers effective in disease severity in the genome of Iranian patients with covid-۱۹
72. TWIST۱ and Stomach Adenocarcinoma: Deciphering the Molecular Landscape of Metastasis-Related Genes
73. In silico analysis of identification dysregulated genes in doxorubicin treatment human cervical cancer cell (HeLa)
74. Targeting the Tumor Stroma: Identifying Crucial Genes in Cancer-Associated Fibroblasts for High-Grade Serous Ovarian Cancer Therapeutics
75. Identification of crucial genes and pathways associated with Hepatocellular carcinoma based on bioinformatics analysis
76. Deciphering Tumor Microenvironment Dynamics and Cellular Communication in Breast Cancer Progression through Single-Cell RNA Sequencing
77. Advancing Feature Selection: A Hybrid Approach for High-Dimensional and Incomplete Data
78. Ensemble based variational autoencoders for detecting protein complexes in proteinprotein interaction networks
79. Transcriptomics analysis of lung samples of COPD patients identifies shared pathways involved in the disease among independent studies
80. Transcriptomic Data Mining to Identify Circular RNAs as Biomarkers in the Development of Grape Clusters
81. High-throughput transcriptome analysis for identification of Helicobacter pylori vaccine target antigens
82. Logical engineering of cellulase enzyme isolated from Acidothermus cellulolyticus bacteria for increasing thermal stability
83. Deciphering the Regulatory Symphony: MicroRNA Orchestration of the RAS/MAPK Signaling Pathway and its Interplay across Cellular Networks in Colorectal Cancer Tumorigenesis – A Systems Biology Perspective
84. The promotor methylation level of ATG۱۲ correlates with tumor progression and autophagy in Bladder cancer; A bioinformatic study
85. Assessment of the isolated compounds from Cumin (Cuminum cyminum) as inhibitor of VEGFR-۲ using molecular docking methodology
86. Medical Image Segmentation using EfficientNet-based U-Net Architecture
87. In-silico analysis of a missense mutation (Leu۳۰۹Pro) in the PYGM gene associated with Glycogen storage disease type V
88. The Expression Level of SQSTM۱ Related to the Progression and Autophagy of Gastric Cancer Based on TCGA
89. In silico analysis of single nucleotide polymorphisms (SNPs) in human HGD gene which is associated with Alkaptonuria
90. Bioinformatic Discovery of Novel FGFR-۱ Inhibitors from Natural Products: A Promising Approach for Lung Cancer Treatment
91. Analysis and Prediction Hormonal Effects of Metformin on PCOS in Mice using Machine Learning algorithms
92. In silico identification of G-quadruplex structure in the STAT-۶ gene sequence
93. Analysis and Prediction PCOS Using Classification Algorithms
94. Presbycusis: Ranking the genes and associated biological function
95. Isolation and computational investigation of class ۳ L- asparaginase form a native Glutamicibacter. SP.
96. An Innovative Unbalanced ANOVA-Based Approach for Multi-Dimensional Feature Evaluation in Brain-Computer Interface Classification
97. In silico evidence for the efficacy of egg peptides in type ۲ diabetes treatment
98. Berberine and Liver Cancer: Analyzing Gene Expression for Therapeutic Clues
99. A Computational Prediction of Novel PET-Degrading Enzymes: Pathway to Sustainable Plastic Management
100. Identification of key differentially expressed miRNAs and their potential target genes in Non-small cell lung cancer using bioinformatics analysis
101. Missense HRC- rs۳۷۴۵۲۹۷ Gene Polymorphisms May Correlate to Humans Cardiac Arrhythmia: A In silico Study
102. Transcriptomics-Based Computational Drug Repurposing Strategy For Identified Therapeutic Candidates Tuberculosis meningitis
103. A Multi-Modal Deep Learning Framework for Prostate Cancer Detection Using MRI
104. In-silico Strategy for the Affinity Improvement of the Anti-TNF-α Antibody Drug by Site-Directed Mutagenesis Approach
105. Unraveling Key Pathways and Hub Genes in Oral Cancer: An Integrated Bioinformatics Analysis
106. Simulation of the Ossicular Chain of the Middle Ear for Material Assignment Purpose
107. Bioinformatic Analysis of P۵۳ Mutations in Cancer
108. Investigating the Association between NID۱ Gene SNPs with Mandibular Prognathism: An In silico Study
109. Tracing the controller genes related to the metastasis mechanisms in squamous cell carcinoma of the head and neck
110. Investigating the Association between SNPs in AGT Gene with Preeclampsia: A In silico Study
111. Hub gene identification and correlation with tumor-infiltrating immune cells in esophageal carcinoma; an RNA-seq and protein-protein interaction analysis
112. Down-regulation of the DAPK۳ gene is associated with the metastasis of papillary thyroid tumors to the lungs
113. Artificial Intelligence-based Classification of Glioblastoma Lifespan: Unveiling the Role of TMEM۱۷۶A
114. Investigating the Inhibitory Effect of Curcumin on FGFR۴: Insights from Docking Studies
115. Deep Learning Framework for Splice Site Prediction Across Multiple Species
116. Bioinformatics Analysis of flavanone-۳՛-hydroxylase (F۳՜H) in Silybum marianum
117. Design of a Novel Ligand Derived from Nigella_Sativa Plant to Inhibit Voltage-Dependent Calcium Channel to Diminish Blood Pressure Using Bioinformatics Tools
118. Identification of Key Genes and Shared Metabolic Pathways in Multiple Sclerosis and Bipolar Disorder Using Systems Biology Approaches
119. The Potential Therapeutic Effects of Quercetin in Type ۱ Diabetes: Targeting Essential Genes and Pathways
120. A Bioinformatic study of the chalcone synthase (CHS۳) gene among different species
121. Homology Modeling and Molecular Dynamics Simulation of Recombinant Laccase
122. Designing targeted PROTAC-based therapeutics against mutant p۵۳ proteins through structure-based virtual screening and dynamic simulations
123. CDC۲۷ pseudogene expression in blast crisis phase of CML
124. Splicing Detection In DNA Sequences With A Focus On Balancing Visual Data And Deep Neural Networks
125. Deciphering the Role of CircRNA-miRNA Networks in Multiple Sclerosis Pathogenesis through Minimal Cut-Set Analysis
126. Study of Lactobacillus Strain L۲۸ Using Bioinformatics Methods
127. Exploring the Synergistic Anticancer Effects of Iranian Medicinal Plants on EGFR Driven Tumor Cell Lines: Integrative Computational and Molecular Dynamics Study)
128. Enrichment analysis of potential hub genes in breast cancer based on TCGA datasets
129. Computational Discovery of Antimicrobial Enzymes from Environmental Microbiota
130. Alzheimer's Disease Detection Using MRI Analysis with Recurrent Deep Networks
131. Comparative genomics of ۹۱۹ microbial genomes of the order Oceanospirillales for oil hydrocarbon degradation
132. Exploring Epigenetic Methylation Patterns in Parkinson's Disease through WGCNA Analysis
133. Enhancing Predictive Accuracy of Biomolecules Partition Coefficients in Aqueous Two-Phase Systems Using Machine Learning
134. Ecotoxicological classification risk index for soil (ECRIS) prediction of some phenolic compounds using multiple linear regressions and artificial neural network QSPR paradigm
135. Integrative Bioinformatics Analysis of Breast Cancer-Derived Extracellular Vesicles in Mediating Cancer-Associated Fibroblast Activation
136. Integrative Bioinformatic analysis of differentially expressed genes and miRNA regulation in neoadjuvant chemotherapy resistance in HER۲+ breast cancer
137. Down-regulation of the LAMB۳ gene induces pulmonary metastasis in thyroid cancer
138. Exploring Traditional Machine Learning and Deep Learning for Predicting Intracytoplasmic Sperm Injection (ICSI) Success Rates
139. Solving haplotype assembly problem by applying particle swarm optimization
140. Microscopic Classification of Microbial Species Using Deep Learning
141. Molecular reasons for the effectiveness of Zinc in modulating Psoriasis
142. Performance evaluation of flexible-receptor docking tools based on the peptide length
143. Quantitative EEG Features to Diagnose Anxiety Disorders
144. Elucidating the Impact of Opium Consumption on Blood Parameters Using Network Analysis and Machine Learning
145. Investigation of FLS۱ Enzyme Involved in the Flavonoids Biosynthesis in Carthamus tinctorius Using Bioinformatics Techniques
146. A Novel Mechanistic Simulation Model for Single-Cell DNA Sequencing
147. A platform for de novo peptide sequence library generation
148. Identification of Genes and Pathways Associated with Depression in Ovarian Cancer Patients: An In-silico Study
149. Investigating the Molecular Docking of Herbal Compounds Quercetin, Isorhamnetin, and Thymoquinone Against Human Epidermal Growth Factor Receptor ۲
150. Transcriptomics-Based Computational Drug Repurposing Strategy Identifies Therapeutic Candidates for Parkinson's Disease
151. Differentiation of glioblastoma multiforme solid and recurrent tumors using gene expression profile and machine learning algorithms
152. Identifying key miRNAs and mRNAs involved in EMT in papillary thyroid carcinoma using bioinformatics techniques
153. Whole Exome Sequencing of a Family with Non-obstructive Azoospermia Men did not Show the C۶۷۷T Variant as an Infertility Risk Factor
154. Screening of cyanobacterial bioactive peptides against viral infections
155. A Deep Learning Approach for Peptide-based Treatment Design
156. Predicting the impact of missense mutations on the protein structure networks: a case study on human phenylalanine hydroxylase and α-galactosidase
157. Discovering the Secrets of Gastric Cancer: Key Genes and Interaction Networks Revealed Through Bioinformatics
158. Colon Cancer Detection on Imbalanced Dataset based on using SMOTE
159. Cancer Prediction through Advanced Gene Expression Analysis Using Machine Learning Method
160. S-Adenosylhomocysteine hydrolase: an evolutionary analysis on the structure and sequence
161. A method to visualize pseudo-potential landscape of high-dimensional Boolean networks
162. Pathogenicity Prediction Assays of Human Missense Variant (rs۱۴۸۴۹۵۴۴۵۰) in CTLA-۴ Gene Based on Protein Sequence, Structure and Function
163. Reveal Genetic Links Among COVID-۱۹, A Deep Neural Network Method to Alzheimer's Disease, and Multiple Sclerosis Based on Single-Cell RNA-seq
164. Breast cancer early detection biomarkers identified from ductal carcinoma in-situ patients: a bioinformatics approach
165. Efficient Hybrid algorithm for Gene Selection Based on Chaos Game Optimization
166. Enhancing Drug Design for VEGFR۲: Integrating Quantum Mechanics-Driven ۳D QSAR with Deep Learning to Predict Drug Efficacy
167. A Siamese neural network for immunotherapy response prediction
168. Transcriptomics-Based Systems Biology Analysis Suggests New Potential Biomarkers for Colorectal Cancer
169. Enrichment analysis of potential hub genes in Acute Myeloid Leukemia based on TCGA datasets
170. Rs۳۵۱۰۷۹۶۲ modifies Microtubule Cytoskeleton Organization via Frameshift in MAP۷ Gene and Protein in Skin Cancer patients: in-silico investigation
171. AKR۱B۱۰ overexpression correlating with LINC۰۱۳۵۹ and hsa-miR-۴۴۸۲-۳p predicts worse overall survival in hepatocellular carcinoma
172. Assessment of the RBP۴ gene and LncRNA LINCO۱۲۱۵ in individuals with breast cancer
173. G-quadruplex structures in ring finger protein ۱ (RING۱) gene sequence
174. HSA-MIR-۵۳۹-۵P promots gastric adenocarcinoma by disturbing interactions of STK۳۲A-AS۱ as a lncRNA
175. Gastric cancer (GC) represents the fifth most common tumor and the fourth leading cause of cancer-related deaths worldwide[۱]. Several genetic and epigenetic factors, including microRNAs(miRNAs) and lncRNAs, affect its initiation and progression. MiRNAs are short chains of nucleic acidsthat can regulate several cellular processes by controlling their gene expression, Long noncodingRNA (LncRNA) is a large class of RNA molecules with size larger than ۲۰۰ nucleotides. They exhibitcellular functions although having no protein-coding capability [۲]. In recent decades, miRNAa andlncRNAs have been st
176. Investigating DCAF۱۰ Gene Expression and its Correlation with Azoospermia
177. Re-purposing Clove Oil in Ovarian Cancer Treatment: A Multi-Dimensional Approach Involving Bulk RNA-Seq and scRNA-Seq
178. A subspace learning aided matrix factorization for drug repurposing
179. Identification of biomarkers involved in the development of grade II meningiomas using the systems biology approach
180. Structural and Functional Consequences of a Novel DDX۳X Frameshift Mutation: A Computational Perspective
181. scFedVI: A Privacy-Preserving Approach to Mitigating Batch Effects in Single-Cell RNA-Sequencing Data
182. Zika virus vaccine design based on epitopes
183. Deep Convolutional Neural Network Model for Predicting MHC I Binding Affinity in Peptide-Based Therapeutics
184. Reconstruction of the miRNA-mRNA regulatory network specifically in the remission and relapse phase of people with multiple sclerosis
185. New feature selection method based on random forest for cancer classification
186. IDENTIFICATION OF CANDIDATE TREATMENT TARGETS IN ESOPHAGEAL CANCER: A COMPREHENSIVE BIOINFORMATIC ANALYSIS
187. Identification of potential prognostic biomarkers in lung adenocarcinoma: A networkbased approach
188. Inference of gene regulatory network using dimension reduction methods and rotation forest
189. Study of the Effect of Cinnamon Plant Hydrosol (Cinnamomum verum) on Peroxidase and Lipase
190. Improved the performance of pathway topology-based methods using Perti Net
191. In-Silico Pathogenicity Prediction of a Human Missense Variant (rs۱۴۷۳۹۶۲۶۳) of NANOS۲ Gene In the Patients with Varicocele Disease
192. Applying various strategies in machine learning models to predict Type II diabetes by using the risk factors
193. DeepSiPPI: Enhancing Protein-Protein Interaction Prediction through Siamese Neural Networks and Sequence-to-Image Transformation
194. Enhancing Precision for Background Mutation Rate Estimation in Cancer Genomes
195. Enhancing Model Evaluation in Single-Cell Perturbation Response Prediction
196. Cancer Gene Expression Classification Using Machine Learning Methods
197. Translation Initiation Site Prediction based on the TITER and Machine Learning Method
198. AI-powered PET imaging analysis for enhanced Parkinson’s disease diagnosis
199. Identification and Evaluation of Neoantigens in Melanoma Patients Using Data Fusion
200. Computational Modeling for Predicting and Designing Melanoma Neoantigens
201. Theoretical modelling of surface plasmon resonance biosensor employing graphene and SnSe heterostructure for Pseudomonas-like bacteria detection
202. Investigating the Prediction of the Pathogenicity of p. Pro۱۴۶Arg Missense Mutation (rs۱۷۷۱۸۸۸۳) in the PD-L۱ Gene with a Bioinformatics Aproach
203. In-Silico pathogenicity prediction of rs۸۸۶۰۴۵۸۶۲ and rs۱۴۴۷۸۸۲۵۴ in the LAMB۳ gene in Junctional epidermolysis bullosa (JEB)
204. Deciphering the molecular interaction between lysozyme and two commonly utilized pesticides: a comprehensive in-silico and spectroscopic study
205. CDK۱ as a Hub Gene: Promising Biomarker for Bladder Cancer Diagnosis
206. Design of guide RNAs for genome editing of Yarrowia lipolytica using deep learning
207. Evaluating the Induction of Apoptosis via Caspase ۳ Activation: A Comparative Study of Mefenamic Acid and Aspirin
208. Identification of D۷۵C, E۲۹۶L as the most promising thermostable mutant of the acetylesterase enzyme from Trichoderma harzianum IOC-۳۸۴۴ by an in-silico approach
