A Systematic review on the status of diarrheagenic Escherichia coli (DEC) pathotypes in Nigeria; the year ۲۰۰۰ – ۲۰۲۲

This systematic review appraised the current status of DEC in Nigeria from the year ۲۰۰۰ to August ۲۰۲۲ with regards to their prevalence, pathotypes distribution, and dominance within the ۶ geopolitical zones. Three research databases (AJOL, PubMed, and Google Scholar) were explored for articles of interest. From the outcome of the search, ۱۹ full-length research articles from January ۲۰۰۰ to August ۲۰۲۲ that described the prevalence of DEC by molecular technique were recruited into the study. The results show that the studies of DEC were higher in the southern (۵۲.۶۳%) than in the northern (۴۷.۳۷%) region. Based on specimen types, ۴۷.۳۷% (۹/۱۹) and ۵۲.۶۳% (۱۰/۱۹) articles documented DEC from non-clinical and clinical sources, respectively. From the clinical sources, ۷۰% of the studies targeted children of less than five years of age for the detection of DEC. The mean prevalence of DEC in Nigeria stands at ۱۸.۸%. The regional prevalence varies with the highest in the SW (۳۲.۵۷%) and the lowest in the NC (۱۰.۰۷%). The relationship between the prevalence of DEC to age group, gender, sample sources (clinical or non-clinical), study design (experimental and control groups), and regional differences were examined using odd ratios and chi-square statistics. Significance differences (P=۰.۰۰۰۱) were obtained for all the parameters except gender which shows a lack of significant difference (P=۰.۱۱۲۹). The most prevalent DEC pathotype was EAEC pathovar (۴۴.۶۲%) and the least was DAEC (۲.۲۳%). The regional distribution of the DEC pathotypes varies with the type of sample (clinical and non-clinical). Hybrid pathotypes were detected and constitute ۴.۸۹ % of the total DEC detected. The most prominent hybrid detected was EAEC/ETEC (۳۹.۱۳%). In that order, the DEC pathotypes were mostly resistant to ampicillin, penicillin, cotrimoxazole, and tetracycline, but were mostly susceptible to imipenem, gentamycin, and ofloxacin. We, therefore, advocate regular or periodic surveillance of DEC, and their drug resistance pattern, which will be useful to clinical personnel in their choice of a treatment regimen.

کلیدواژه ها:

diarrhoea ، E. coli ، Stool ، pathotype ، geopolitical zones ، childhood